PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794568.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 239aa    MW: 26957.8 Da    PI: 6.2563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-14113166155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y GV +++ +g + Ae rdps  g   +r +lg++ tae+Aa a+++a+ k++g
  XP_009794568.1 113 TRYIGVKRRP-WGTFSAETRDPSRKG-EgARLWLGTYETAEDAALAYDQAAFKIRG 166
                     589****9*9.**********85533.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-25113176No hitNo description
PfamPF008471.5E-10113166IPR001471AP2/ERF domain
SMARTSM003808.9E-28114180IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-18114175IPR016177DNA-binding domain
PROSITE profilePS5103221.535114174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-26114175IPR001471AP2/ERF domain
PRINTSPR003679.3E-8115126IPR001471AP2/ERF domain
PRINTSPR003679.3E-8140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAMEMNPADE TLFFSDSHLL ESIKQHLLDD SDFSEIFSSM NSSNEILPNS PSSSFSSFDF  60
DCSFLNWDEN SEETLIPTDQ NPSHESHEKY SESEEKTQCP GVAREKNAPR DWTRYIGVKR  120
RPWGTFSAET RDPSRKGEGA RLWLGTYETA EDAALAYDQA AFKIRGSRAR LNFPHLIGSN  180
MPKPARVTAR RSRTRSPEPS SSSSTSSSEN VPRKRNIDVI NSIAKAKFLC HSLNLQRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-24115174360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-24115179668ATERF1
3gcc_A9e-24115179668ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8279510.0AB827951.1 Nicotiana tabacum ERF189 mRNA for ethylene response factor 189, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794568.11e-178PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ404794e-37ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A060N1851e-135A0A060N185_TOBAC; Ethylene response factor 189
STRINGPGSC0003DMT4000971012e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-21ethylene-responsive element binding factor 13